Strain Passport - Bacillus paralicheniformis

1. Taxonomy

Taxonomy
Domain Bacteria
Phylum Firmicutes
Class Bacilli
Order Bacillales
Family Bacillaceae
Genus Bacillus
Species Bacillus paralicheniformis

2. Assembly Statistics

Assembly Statistics
MAGID MAG11
Size (bp) 4323803
N.contigs 73
GC (%) 46
N50 (bp) 131366
Coding Density 87.5
N.CDSs 4302
Genome Completeness
Completeness 98.76
Contamination 0.17
Strain heterogeneity 75.00

3. Metabolism and Function (KEGG)

KEGG Function Annotation

Bacillus paralicheniformis KEGG Functional Classification

KEGG Resistome

name Type Level1 Level2 Description KO
ko01504 Gene variants Aminoglycoside resistance genes O-Nucleotidyltransferases K05593 aadK; aminoglycoside 6-adenylyltransferase [EC:2.7.7.-] K05593
ko01504 Gene variants Aminoglycoside resistance genes O-Phosphotransferases K18844 aph, spcN; spectinomycin phosphotransferase K18844
ko01504 Gene variants Tetracycline resistance genes Transporters K08168 tetB; MFS transporter, DHA2 family, metal-tetracycline-proton antiporter K08168
ko01504 Gene variants Macrolide resistance genes 23S rRNA methyltransferases K00561 ermC, ermA; 23S rRNA (adenine-N6)-dimethyltransferase [EC:2.1.1.184] K00561
ko01504 Gene variants Macrolide resistance genes Transporters K18231 msr, vmlR; macrolide transport system ATP-binding/permease protein K18231
ko01504 Gene variants Macrolide resistance genes Transporters K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein K08217
ko01504 Gene variants Macrolide resistance genes Others K06880 ereA_B; erythromycin esterase [EC:3.1.1.-] K06880
ko01504 Gene variants Macrolide resistance genes Others K18235 vgb; virginiamycin B lyase [EC:4.2.99.-] K18235
ko01504 Gene variants Macrolide resistance genes Others K06979 mph; macrolide phosphotransferase K06979
ko01504 Gene variants Phenicol resistance genes Acetyltransferases K19271 catA; chloramphenicol O-acetyltransferase type A [EC:2.3.1.28] K19271
ko01504 Gene sets beta-Lactam resistance modules beta-Lactam resistance, Bla system [MD:M00627] K02172 blaR1; bla regulator protein blaR1 K02172
ko01504 Gene sets beta-Lactam resistance modules beta-Lactam resistance, Bla system [MD:M00627] K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor K02171
ko01504 Gene sets beta-Lactam resistance modules beta-Lactam resistance, Bla system [MD:M00627] K17836 penP; beta-lactamase class A [EC:3.5.2.6] K17836
ko01504 Gene sets Vancomycin resistance modules Vancomycin resistance, D-Ala-D-Lac type [MD:M00651] K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] K07260
ko01504 Gene sets Vancomycin resistance modules Vancomycin resistance, D-Ala-D-Lac type [MD:M00651] K18346 vanW; vancomycin resistance protein VanW K18346
ko01504 Gene sets Vancomycin resistance modules Tetracycline resistance, efflux pump Tet38 [MD:M00704] K08168 tetB; MFS transporter, DHA2 family, metal-tetracycline-proton antiporter K08168
ko01504 Gene sets CAMP resistance modules Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [MD:M00725] K03367 dltA; D-alanine–poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] K03367
ko01504 Gene sets CAMP resistance modules Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [MD:M00725] K03739 dltB; membrane protein involved in D-alanine export K03739
ko01504 Gene sets CAMP resistance modules Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [MD:M00725] K14188 dltC; D-alanine–poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13] K14188
ko01504 Gene sets CAMP resistance modules Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [MD:M00725] K03740 dltD; D-alanine transfer protein K03740
ko01504 Gene sets CAMP resistance modules Cationic antimicrobial peptide (CAMP) resistance, lysyl-phosphatidylglycerol (L-PG) synthase MprF [MD:M00726] K14205 mprF, fmtC; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] K14205
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump AbcA [MD:M00700] K18907 norG; GntR family transcriptional regulator, regulator for abcA and norABC K18907
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump AbcA [MD:M00700] K18104 abcA, bmrA; ATP-binding cassette, subfamily B, bacterial AbcA/BmrA [EC:7.6.2.2] K18104
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump NorB [MD:M00702] K18907 norG; GntR family transcriptional regulator, regulator for abcA and norABC K18907

KEGG Toxins

name Type Level1 Level2 Description KO
ko02042 Type II toxins: Membrane damaging toxins Pore-forming toxins, Other K03699 tlyC; magnesium and cobalt exporter, CNNM family tlyC; magnesium and cobalt exporter, CNNM family K03699
ko02042 Type II toxins: Membrane damaging toxins Pore-forming toxins, Other K11068 hlyIII; hemolysin III hlyIII; hemolysin III K11068

KEGG Bacterial Virulence

GeneID KO Description PFAM
MAG11_DPJDHM_11700 K08303 U32 family peptidase [EC:3.4.-.-] Peptidase family U32 [PF01136.22]…
MAG11_DPJDHM_12925 K03596 GTP-binding protein LepA GTP-binding protein LepA C-terminus [PF06421.15]…

Carbon Metabolism

Nitrogen Metabolism

4. Expert systems

AMRFinderPlus Antimicrobial Resistance

AMRFinderPlus
locus pscc.product gene_family class subclass
DPJDHM_04915 Regulatory protein BlaR1 blaR1 BETA-LACTAM BETA-LACTAM
DPJDHM_04925 Beta-lactamase blaP BETA-LACTAM BETA-LACTAM
DPJDHM_11870 Chloramphenicol acetyltransferase catA PHENICOL CHLORAMPHENICOL
DPJDHM_12050 rRNA adenine N-6-methyltransferase erm(D) MACROLIDE MACROLIDE

Virulence factors (VFDB)

## No VFDB data

5. BacDive

BacDive
Species Bacillus paralicheniformis
ncbi_taxid 1648923
taxid_matching_level species
type_strain yes
medium_name NA
medium_link NA
strain_history NA
gram NA
length NA
width NA
motility NA
oxygen_tolerance NA
spore NA
aggregation_score NA
GC_content NA
antibiotic_resistance_chebi NA
antibiotic_resistance_metabolite NA

6. Publications

7. U.S. Patents

First 1 patents out of 1

patent_number patent_title
8404476 Pure culture of strain AH2 of the Bacillus velezensis species and a product for the biological control of phytopathogenic fungi